Harrell Miscellaneous

Documentation for package ‘Hmisc’ version 3.4-4

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A B C D E F G H I J K L M N O P Q R S T U V W X Y misc

%nin%	Find Matching (or Non-Matching) Elements
.R.	Miscellaneous Functions
.SV4.	Miscellaneous Functions

-- A --

abs.error.pred	Indexes of Absolute Prediction Error for Linear Models
all.digits	Character String Editing and Miscellaneous Character Handling Functions
all.is.numeric	Check if All Elements in Character Vector are Numeric
approxExtrap	Linear Extrapolation
areg	Additive Regression with Optimal Transformations on Both Sides using Canonical Variates
areg.boot	Additive Regression and Transformations using ace or avas
aregImpute	Multiple Imputation using Additive Regression, Bootstrapping, and Predictive Mean Matching
as.data.frame.labelled	Label Attribute of an Object
as.double.mChoice	Methods for Storing and Analyzing Multiple Choice Variables
asNumericMatrix	Summarize Scalars or Matrices by Cross-Classification

-- B --

ballocation	Power and Sample Size for Two-Sample Binomial Test
bezier	Label Curves, Make Keys, and Interactively Draw Points and Curves
binconf	Confidence Intervals for Binomial Probabilities
biVar	Bivariate Summaries Computed Separately by a Series of Predictors
bootkm	Bootstrap Kaplan-Meier Estimates
bpower	Power and Sample Size for Two-Sample Binomial Test
bpplot	Box-percentile plots
bpplt	Box-Percentile Panel Function for Trellis
bsamsize	Power and Sample Size for Two-Sample Binomial Test
bystats	Statistics by Categories
bystats2	Statistics by Categories

-- C --

Cbind	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
ceil	return the floor, ceiling, or rounded value of date or time to specified unit.
character.table	Display Colors, Plotting Symbols, and Symbol Numeric Equivalents
chiSquare	Bivariate Summaries Computed Separately by a Series of Predictors
ciapower	Power of Interaction Test for Exponential Survival
cleanup.import	Update a Data Frame or Cleanup a Data Frame after Importing
clowess	Miscellaneous Functions
code.levels	Convert a SAS Dataset to an S Data Frame
combine	Element Merging
combine.levels	Variable Clustering
confbar	Miscellaneous Functions
contents	Metadata for a Data Frame
cpower	Power of Cox/log-rank Two-Sample Test
Cs	Character strings from unquoted names
csv.get	Read Comma-Separated Text Data Files
cumcategory	Summarize Data for Making Tables and Plots
curveRep	Representative Curves
curveSmooth	Representative Curves
cut2	Cut a Numeric Variable into Intervals

-- D --

data.frame.create.modify.check	Tips for Creating, Modifying, and Checking Data Frames
data.frame.labelled	Label Attribute of an Object
datadensity	One-Dimensional Scatter Diagram, Spike Histogram, or Density
dataframeReduce	Update a Data Frame or Cleanup a Data Frame after Importing
dataRep	Representativeness of Observations in a Data Set
deff	Design Effect and Intra-cluster Correlation
describe	Concise Statistical Description of a Vector, Matrix, Data Frame, or Formula
dotchart2	Enhanced Dot Chart
Dotplot	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
drawPlot	Label Curves, Make Keys, and Interactively Draw Points and Curves
dropUnusedLevels	Create Temporary Factor Subsetting Function
dvi	Convert an S object to LaTeX, and Related Utilities
dvigv	Convert an S object to LaTeX, and Related Utilities
dvips	Convert an S object to LaTeX, and Related Utilities

-- E --

Ecdf	Empirical Cumulative Distribution Plot
eip	Edit In Place
equalBins	Multicolumn Formating
errbar	Plot Error Bars
escapeBS	Escapes any characters that would have special meaning in a reqular expression.
escapeRegex	Escapes any characters that would have special meaning in a reqular expression.
event.chart	Flexible Event Chart for Time-to-Event Data
event.convert	Flexible Event Chart for Time-to-Event Data
event.history	Produces event.history graph for survival data
exportDataStripped	Update a Data Frame or Cleanup a Data Frame after Importing

-- F --

find.matches	Find Close Matches
first.word	First Word in a String or Expression
fit.mult.impute	Transformations/Imputations using Canonical Variates
format.df	Format a Data Frame or Matrix for LaTeX or HTML
format.mChoice	Methods for Storing and Analyzing Multiple Choice Variables
format.pval	Format P Values
format.special.miss	Convert a SAS Dataset to an S Data Frame
formula.summary.formula.cross	Summarize Data for Making Tables and Plots
Function	Transformations/Imputations using Canonical Variates
Function.areg.boot	Additive Regression and Transformations using ace or avas
Function.transcan	Transformations/Imputations using Canonical Variates

-- G --

gbayes	Gaussian Bayesian Posterior and Predictive Distributions
gbayes1PowerNP	Gaussian Bayesian Posterior and Predictive Distributions
gbayes2	Gaussian Bayesian Posterior and Predictive Distributions
gbayesMixPost	Gaussian Bayesian Posterior and Predictive Distributions
gbayesMixPowerNP	Gaussian Bayesian Posterior and Predictive Distributions
gbayesMixPredNoData	Gaussian Bayesian Posterior and Predictive Distributions
getHdata	Download and Install Datasets for Hmisc, Design, and Statistical Modeling
getLatestSource	Miscellaneous Functions
getZip	Open a Zip File From a URL.
Gompertz2	Simulate Power of 2-Sample Test for Survival under Complex Conditions

-- H --

hdquantile	Harrell-Davis Distribution-Free Quantile Estimator
hist.data.frame	Histograms for Variables in a Data Frame
histbackback	Back to Back Histograms
histSpike	One-Dimensional Scatter Diagram, Spike Histogram, or Density
Hmisc.Overview	Overview of Hmisc Library
hoeffd	Matrix of Hoeffding's D Statistics
html	Convert an S object to HTML
html.contents.data.frame	Metadata for a Data Frame
html.data.frame	Convert an S object to HTML
html.default	Convert an S object to HTML
html.latex	Convert an S object to HTML

-- I --

impute	Generic Functions and Methods for Imputation
impute.transcan	Transformations/Imputations using Canonical Variates
inmChoice	Methods for Storing and Analyzing Multiple Choice Variables
inverseFunction	Miscellaneous Functions
invertTabulated	Transformations/Imputations using Canonical Variates
is.imputed	Generic Functions and Methods for Imputation
is.mChoice	Methods for Storing and Analyzing Multiple Choice Variables
is.special.miss	Convert a SAS Dataset to an S Data Frame

-- J --

james.stein	Miscellaneous Functions
jitter2	One-Dimensional Scatter Diagram, Spike Histogram, or Density

-- K --

km.quick

Miscellaneous Functions

-- L --

labcurve	Label Curves, Make Keys, and Interactively Draw Points and Curves
Label	Label Attribute of an Object
label	Label Attribute of an Object
Label.data.frame	Label Attribute of an Object
label.default	Label Attribute of an Object
labelPlotmath	Label Attribute of an Object
Lag	Lag a Numeric, Character, or Factor Vector
largest.empty	Label Curves, Make Keys, and Interactively Draw Points and Curves
latex	Convert an S object to LaTeX, and Related Utilities
latex.bystats	Statistics by Categories
latex.bystats2	Statistics by Categories
latex.default	Convert an S object to LaTeX, and Related Utilities
latex.describe	Concise Statistical Description of a Vector, Matrix, Data Frame, or Formula
latex.function	Convert an S object to LaTeX, and Related Utilities
latex.list	Convert an S object to LaTeX, and Related Utilities
latex.summary.formula.cross	Summarize Data for Making Tables and Plots
latex.summary.formula.response	Summarize Data for Making Tables and Plots
latex.summary.formula.reverse	Summarize Data for Making Tables and Plots
latexSN	Convert an S object to LaTeX, and Related Utilities
latexTranslate	Convert an S object to LaTeX, and Related Utilities
latexVerbatim	Convert an S object to LaTeX, and Related Utilities
ldBands	Group Sequential Boundaries using the Lan-DeMets Approach
list.tree	Pretty-print the Structure of a Data Object
llist	Label Attribute of an Object
lm.fit.qr.bare	Miscellaneous Functions
Load	Faciliate Use of save and load to Remote Directories
Lognorm2	Simulate Power of 2-Sample Test for Survival under Complex Conditions
logrank	Simulate Power of 2-Sample Test for Survival under Complex Conditions

-- M --

makeNstr	creates a string that is a repeat of a substring
mApply	Apply a Function to Rows of a Matrix or Vector
matchCases	Find Close Matches
matrix2dataFrame	Summarize Scalars or Matrices by Cross-Classification
matxv	Miscellaneous Functions
mChoice	Methods for Storing and Analyzing Multiple Choice Variables
mdb.get	Read Tables in a Microsoft Access Database
Mean	Additive Regression and Transformations using ace or avas
Mean.areg.boot	Additive Regression and Transformations using ace or avas
mgp.axis	Draw Axes With Side-Specific mgp Parameters
minor.tick	Minor Tick Marks
monotone	Additive Regression and Transformations using ace or avas
monthDays	Get Number of Days in Year or Month
mtitle	Margin Titles

-- N --

na.delete	Row-wise Deletion na.action
na.detail.response	Detailed Response Variable Information
na.keep	Do-nothing na.action
na.pattern	Variable Clustering
na.retain	Summarize Data for Making Tables and Plots
naclus	Variable Clustering
naplot	Variable Clustering
nomiss	Miscellaneous Functions
num.denom.setup	Weighted Statistical Estimates
numeric.string	Character String Editing and Miscellaneous Character Handling Functions
numericScale	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands

-- O --

outerText	Miscellaneous Functions
Overview	Overview of Hmisc Library

-- P --

panel.bpplot	Box-Percentile Panel Function for Trellis
panel.Dotplot	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
panel.Ecdf	Empirical Cumulative Distribution Plot
panel.plsmo	Plot smoothed estimates
panel.xYplot	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
partition	Patitions an object into different sets
pc1	First Principal Component
plot.areg	Additive Regression with Optimal Transformations on Both Sides using Canonical Variates
plot.areg.boot	Additive Regression and Transformations using ace or avas
plot.aregImpute	Multiple Imputation using Additive Regression, Bootstrapping, and Predictive Mean Matching
plot.biVar	Bivariate Summaries Computed Separately by a Series of Predictors
plot.curveRep	Representative Curves
plot.drawPlot	Label Curves, Make Keys, and Interactively Draw Points and Curves
plot.gbayes	Gaussian Bayesian Posterior and Predictive Distributions
plot.ldBands	Group Sequential Boundaries using the Lan-DeMets Approach
plot.Quantile2	Simulate Power of 2-Sample Test for Survival under Complex Conditions
plot.rm.boot	Bootstrap Repeated Measurements Model
plot.summary.formula.response	Summarize Data for Making Tables and Plots
plot.summary.formula.reverse	Summarize Data for Making Tables and Plots
plot.transcan	Transformations/Imputations using Canonical Variates
plot.varclus	Variable Clustering
plotCorrPrecision	Plot Precision of Estimate of Pearson Correlation Coefficient
plotmathTranslate	Label Attribute of an Object
plotMultSim	Variable Clustering
plsmo	Plot smoothed estimates
popower	Power and Sample Size for Ordinal Response
posamsize	Power and Sample Size for Ordinal Response
predict.areg	Additive Regression with Optimal Transformations on Both Sides using Canonical Variates
predict.areg.boot	Additive Regression and Transformations using ace or avas
predict.dataRep	Representativeness of Observations in a Data Set
predict.transcan	Transformations/Imputations using Canonical Variates
prepanel.Dotplot	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
prepanel.Ecdf	Empirical Cumulative Distribution Plot
prepanel.xYplot	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
print.abs.error.pred	Indexes of Absolute Prediction Error for Linear Models
print.areg	Additive Regression with Optimal Transformations on Both Sides using Canonical Variates
print.areg.boot	Additive Regression and Transformations using ace or avas
print.aregImpute	Multiple Imputation using Additive Regression, Bootstrapping, and Predictive Mean Matching
print.biVar	Bivariate Summaries Computed Separately by a Series of Predictors
print.bystats	Statistics by Categories
print.bystats2	Statistics by Categories
print.char.list	prints a list of lists in a visually readable format.
print.char.matrix	Function to print a matrix with stacked cells
print.contents.data.frame	Metadata for a Data Frame
print.contents.list	Metadata for a Data Frame
print.curveRep	Representative Curves
print.dataRep	Representativeness of Observations in a Data Set
print.describe	Concise Statistical Description of a Vector, Matrix, Data Frame, or Formula
print.dvi	Convert an S object to LaTeX, and Related Utilities
print.find.matches	Find Close Matches
print.hoeffd	Matrix of Hoeffding's D Statistics
print.html	Convert an S object to HTML
print.impute	Generic Functions and Methods for Imputation
print.labelled	Label Attribute of an Object
print.latex	Convert an S object to LaTeX, and Related Utilities
print.ldBands	Group Sequential Boundaries using the Lan-DeMets Approach
print.mChoice	Methods for Storing and Analyzing Multiple Choice Variables
print.popower	Power and Sample Size for Ordinal Response
print.posamsize	Power and Sample Size for Ordinal Response
print.predict.dataRep	Representativeness of Observations in a Data Set
print.Quantile2	Simulate Power of 2-Sample Test for Survival under Complex Conditions
print.rcorr	Matrix of Correlations and P-values
print.redun	Redundancy Analysis
print.special.miss	Convert a SAS Dataset to an S Data Frame
print.summary.areg.boot	Additive Regression and Transformations using ace or avas
print.summary.formula.cross	Summarize Data for Making Tables and Plots
print.summary.formula.response	Summarize Data for Making Tables and Plots
print.summary.formula.reverse	Summarize Data for Making Tables and Plots
print.summary.ldBands	Group Sequential Boundaries using the Lan-DeMets Approach
print.summary.mChoice	Methods for Storing and Analyzing Multiple Choice Variables
print.t.test.cluster	t-test for Clustered Data
print.transcan	Transformations/Imputations using Canonical Variates
print.varclus	Variable Clustering
prn	Print and Object with its Name
ps.slide	Postscript and Adobe PDF Setup for 35mm Slides and Other Formats
pstamp	Date/Time/Directory Stamp the Current Plot
putKey	Label Curves, Make Keys, and Interactively Draw Points and Curves
putKeyEmpty	Label Curves, Make Keys, and Interactively Draw Points and Curves

-- Q --

Quantile	Additive Regression and Transformations using ace or avas
Quantile.areg.boot	Additive Regression and Transformations using ace or avas
Quantile2	Simulate Power of 2-Sample Test for Survival under Complex Conditions

-- R --

rcorr	Matrix of Correlations and P-values
rcorr.cens	Rank Correlation for Censored Data
rcorrp.cens	Rank Correlation for Paired Predictors with a Censored Response
rcspline.eval	Restricted Cubic Spline Design Matrix
rcspline.plot	Plot Restricted Cubic Spline Function
rcspline.restate	Re-state Restricted Cubic Spline Function
rcsplineFunction	Re-state Restricted Cubic Spline Function
redun	Redundancy Analysis
reLabelled	Label Attribute of an Object
reorder.factor	Reorder Factor Levels
replace.substring.wild	Character String Editing and Miscellaneous Character Handling Functions
requirePackage	require a packge and error if package is not installed
reShape	Reshape Matrices and Serial Data
rlegend	Special Version of legend for R
rlegendg	Special Version of legend for R
rm.boot	Bootstrap Repeated Measurements Model
rMultinom	Generate Multinomial Random Variables with Varying Probabilities
round.POSIXt	return the floor, ceiling, or rounded value of date or time to specified unit.
roundN	Representativeness of Observations in a Data Set

-- S --

samplesize.bin	Sample Size for 2-sample Binomial
sas.codes	Convert a SAS Dataset to an S Data Frame
sas.get	Convert a SAS Dataset to an S Data Frame
sasdsLabels	Enhanced Importing of SAS Transport Files using read.xport
sasxport.get	Enhanced Importing of SAS Transport Files using read.xport
Save	Faciliate Use of save and load to Remote Directories
scat1d	One-Dimensional Scatter Diagram, Spike Histogram, or Density
score.binary	Score a Series of Binary Variables
sedit	Character String Editing and Miscellaneous Character Handling Functions
sepUnitsTrans	Miscellaneous Functions
setpdf	Postscript and Adobe PDF Setup for 35mm Slides and Other Formats
setps	Postscript and Adobe PDF Setup for 35mm Slides and Other Formats
setTrellis	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
show.col	Display Colors, Plotting Symbols, and Symbol Numeric Equivalents
show.dvi	Convert an S object to LaTeX, and Related Utilities
show.html	Convert an S object to HTML
show.latex	Convert an S object to LaTeX, and Related Utilities
show.pch	Display Colors, Plotting Symbols, and Symbol Numeric Equivalents
showPsfrag	Postscript and Adobe PDF Setup for 35mm Slides and Other Formats
simplifyDims	List Simplification
smean.cl.boot	Compute Summary Statistics on a Vector
smean.cl.normal	Compute Summary Statistics on a Vector
smean.sd	Compute Summary Statistics on a Vector
smean.sdl	Compute Summary Statistics on a Vector
smearingEst	Additive Regression and Transformations using ace or avas
smedian.hilow	Compute Summary Statistics on a Vector
solvet	solve Function with tol argument
somers2	Somers' Dxy Rank Correlation
spearman	Bivariate Summaries Computed Separately by a Series of Predictors
spearman2	Bivariate Summaries Computed Separately by a Series of Predictors
spower	Simulate Power of 2-Sample Test for Survival under Complex Conditions
spss.get	Enhanced Importing of SPSS Files
src	Source a File from the Current Working Directory
stata.get	Enhanced Importing of STATA Files
store	Store an Object Permanently
stores	Store an Object Permanently
storeTemp	Store an Object Permanently
stratify	Summarize Data for Making Tables and Plots
string.bounding.box	Determine Diamentions of Strings
string.break.line	Break a string into many lines at carage retruns.
stringDims	String Dimentions
substring.location	Character String Editing and Miscellaneous Character Handling Functions
substring2	Character String Editing and Miscellaneous Character Handling Functions
summarize	Summarize Scalars or Matrices by Cross-Classification
summary.areg.boot	Additive Regression and Transformations using ace or avas
summary.find.matches	Find Close Matches
summary.formula	Summarize Data for Making Tables and Plots
summary.impute	Generic Functions and Methods for Imputation
summary.ldBands	Group Sequential Boundaries using the Lan-DeMets Approach
summary.mChoice	Methods for Storing and Analyzing Multiple Choice Variables
summary.transcan	Transformations/Imputations using Canonical Variates
symbol.freq	Graphic Representation of a Frequency Table
sys	Run Unix or Dos Depending on System

-- T --

t.test.cluster	t-test for Clustered Data
tex	Postscript and Adobe PDF Setup for 35mm Slides and Other Formats
timePOSIXt	Convert a SAS Dataset to an S Data Frame
topdf	Postscript and Adobe PDF Setup for 35mm Slides and Other Formats
transace	Additive Regression and Transformations using ace or avas
transcan	Transformations/Imputations using Canonical Variates
translate	Translate Vector or Matrix of Text Strings
trap.rule	Miscellaneous Functions
trellis.strip.blank	Miscellaneous Functions
trunc.POSIXt	return the floor, ceiling, or rounded value of date or time to specified unit.

-- U --

under.unix	Miscellaneous Functions
units	Units Attribute of a Vector
unPaste	Miscellaneous Functions
upData	Update a Data Frame or Cleanup a Data Frame after Importing

-- V --

valueLabel	Store Discriptive Information About an Object
valueName	Store Discriptive Information About an Object
valueTags	Store Discriptive Information About an Object
valueUnit	Store Discriptive Information About an Object
varclus	Variable Clustering
Varcov	Transformations/Imputations using Canonical Variates
Varcov.fit.mult.impute	Transformations/Imputations using Canonical Variates
Varcov.glm	Transformations/Imputations using Canonical Variates
Varcov.lm	Transformations/Imputations using Canonical Variates
Varcov.multinom	Transformations/Imputations using Canonical Variates

-- W --

Weibull2	Simulate Power of 2-Sample Test for Survival under Complex Conditions
whichClosePW	Miscellaneous Functions
whichClosest	Miscellaneous Functions
wtd.Ecdf	Weighted Statistical Estimates
wtd.loess.noiter	Weighted Statistical Estimates
wtd.mean	Weighted Statistical Estimates
wtd.quantile	Weighted Statistical Estimates
wtd.rank	Weighted Statistical Estimates
wtd.table	Weighted Statistical Estimates
wtd.var	Weighted Statistical Estimates

-- X --

xless	Miscellaneous Functions
xy.group	Mean x vs. function of y in groups of x
xYplot	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands

-- Y --

yearDays

Get Number of Days in Year or Month

-- misc --

[.Cbind	xyplot and dotplot with Matrix Variables to Plot Error Bars and Bands
[.describe	Concise Statistical Description of a Vector, Matrix, Data Frame, or Formula
[.impute	Generic Functions and Methods for Imputation
[.labelled	Label Attribute of an Object
[.mChoice	Methods for Storing and Analyzing Multiple Choice Variables
[.roundN	Representativeness of Observations in a Data Set
[.special.miss	Convert a SAS Dataset to an S Data Frame
[.summary.formula.response	Summarize Data for Making Tables and Plots
[.transcan	Transformations/Imputations using Canonical Variates