pappso::specpeptidoms::AminoAcidModel Struct Reference

#include <peptidemodel.h>

Public Member Functions
QString	toProForma () const
QString	toInterpretation () const

Public Attributes
pappso::Aa	m_aminoAcid = pappso::Aa('A')
double	m_massDifference = 0
bool	m_skipped = false

Detailed Description

Definition at line 43 of file peptidemodel.h.

Member Function Documentation

toInterpretation()

QString pappso::specpeptidoms::AminoAcidModel::toInterpretation

(

)

const

Definition at line 54 of file peptidemodel.cpp.

{
  if(m_massDifference != 0)
    {
      if(m_skipped)
        {
          return QString("[%1][%2]")
            .arg(m_aminoAcid.toString())
            .arg(QString::number(m_massDifference));
        }
      else
        {
          return QString("%1[%2]")
            .arg(m_aminoAcid.toString())
            .arg(QString::number(m_massDifference));
        }
    }
  else if(m_skipped)
    {
      return QString("[%1]").arg(m_aminoAcid.toString());
    }
  else
    {
      return m_aminoAcid.toString();
    }
}

References m_aminoAcid, m_massDifference, and m_skipped.

toProForma()

QString pappso::specpeptidoms::AminoAcidModel::toProForma

(

)

const

Definition at line 39 of file peptidemodel.cpp.

{
  if(m_massDifference != 0)
    {
      return QString("%1[%2]")
        .arg(m_aminoAcid.toProForma())
        .arg(PeptideModel::toProFormaMass(m_massDifference));
    }
  else
    {
      return m_aminoAcid.toProForma();
    }
}

References m_aminoAcid, m_massDifference, and pappso::specpeptidoms::PeptideModel::toProFormaMass().

Member Data Documentation

m_aminoAcid

pappso::Aa pappso::specpeptidoms::AminoAcidModel::m_aminoAcid = pappso::Aa('A')

Definition at line 45 of file peptidemodel.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::saveBestAlignment(), toInterpretation(), and toProForma().

m_massDifference

double pappso::specpeptidoms::AminoAcidModel::m_massDifference = 0

Definition at line 46 of file peptidemodel.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::saveBestAlignment(), toInterpretation(), and toProForma().

m_skipped

bool pappso::specpeptidoms::AminoAcidModel::m_skipped = false

Definition at line 47 of file peptidemodel.h.

Referenced by pappso::specpeptidoms::SemiGlobalAlignment::saveBestAlignment(), and toInterpretation().

---

The documentation for this struct was generated from the following files:

• pappsomspp/core/processing/specpeptidoms/peptidemodel.h
• pappsomspp/core/processing/specpeptidoms/peptidemodel.cpp