mzcbormsfilereader.h

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#pragma once
 
#include <QString>
 
#include <pwiz/data/msdata/MSData.hpp>
 
#include "pappsomspp/core/types.h"
#include "msfilereader.h"
#include "pappsomspp/core/msrun/msrunid.h"
#include "pappsomspp/core/processing/cbor/mzcbor/mzcborindexreader.h"
#include "pappsomspp/core/processing/cbor/mzcbor/mzcborreaderbase.h"
 
 
namespace pappso
{
 
/**
 * @todo write docs
 */
class MzcborMsFileReader : MsFileReader
{
 
  public:
  MzcborMsFileReader(const QString &file_name);
  virtual ~MzcborMsFileReader();
 
  virtual Enums::MsDataFormat getFileFormat() override;
 
  virtual std::vector<MsRunIdCstSPtr> getMsRunIds(const QString &run_prefix) override;
 
  private:
  virtual std::size_t initialize();
 
  private:
  std::vector<pwiz::msdata::MSDataPtr> m_msDataPtrVector;
 
  pappso::cbor::mzcbor::MzcborReaderBase m_mzcborReaderBase;
  pappso::cbor::mzcbor::MzcborIndexReader m_mzcborIndexReader;
};
} // namespace pappso