pappso::GrpMapPeptideToGroup Class Reference

#include <grpmappeptidetogroup.h>

Public Member Functions
	GrpMapPeptideToGroup ()
	GrpMapPeptideToGroup (const GrpMapPeptideToGroup &other)
	~GrpMapPeptideToGroup ()
void	getGroupList (const GrpPeptideSet &peptide_set_in, std::list< GrpGroupSp > &impacted_group_list) const
	get all groups concerned by a list of peptides
void	set (const GrpPeptideSet &peptide_set_in, GrpGroupSp grp_group)
	set peptide keys pointing on the group
void	clear (std::list< GrpGroupSp > &grp_group_list)

Private Attributes
std::map< GrpPeptide *, GrpGroupSp >	m_mapPeptideToGroup

Detailed Description

Definition at line 42 of file grpmappeptidetogroup.h.

Constructor & Destructor Documentation

GrpMapPeptideToGroup() [1/2]

pappso::GrpMapPeptideToGroup::GrpMapPeptideToGroup

(

)

Definition at line 36 of file grpmappeptidetogroup.cpp.

{
}

Referenced by GrpMapPeptideToGroup().

GrpMapPeptideToGroup() [2/2]

pappso::GrpMapPeptideToGroup::GrpMapPeptideToGroup

(

const GrpMapPeptideToGroup &

other

)

Definition at line 40 of file grpmappeptidetogroup.cpp.

  : m_mapPeptideToGroup(other.m_mapPeptideToGroup)
{
}

References GrpMapPeptideToGroup(), and m_mapPeptideToGroup.

~GrpMapPeptideToGroup()

pappso::GrpMapPeptideToGroup::~GrpMapPeptideToGroup

(

)

Definition at line 45 of file grpmappeptidetogroup.cpp.

{
}

Member Function Documentation

clear()

void pappso::GrpMapPeptideToGroup::clear

(

std::list< GrpGroupSp > &

grp_group_list

)

Definition at line 88 of file grpmappeptidetogroup.cpp.

{
 
  std::list<GrpGroupSp> new_list;
  for(auto &pair_map : m_mapPeptideToGroup)
    {
      new_list.push_back(pair_map.second);
    }
  new_list.sort();
  new_list.unique();
 
  grp_group_list.splice(grp_group_list.end(), new_list);
  m_mapPeptideToGroup.clear();
}

References m_mapPeptideToGroup.

Referenced by pappso::GrpExperiment::removeNonInformativeSubGroups(), and pappso::GrpExperiment::startGrouping().

getGroupList()

void pappso::GrpMapPeptideToGroup::getGroupList	(	const GrpPeptideSet &	peptide_set_in,
		std::list< GrpGroupSp > &	impacted_group_list ) const

get all groups concerned by a list of peptides

Definition at line 50 of file grpmappeptidetogroup.cpp.

{
  auto it_peptide_end = peptide_set_in.m_peptidePtrList.end();
  std::map<GrpPeptide *, GrpGroupSp>::const_iterator it_map_end = m_mapPeptideToGroup.end();
 
  for(auto it_peptide = peptide_set_in.m_peptidePtrList.begin(); it_peptide != it_peptide_end;
      it_peptide++)
    {
      std::map<GrpPeptide *, GrpGroupSp>::const_iterator it_map =
        m_mapPeptideToGroup.find(*it_peptide);
      if(it_map != it_map_end)
        {
          impacted_group_list.push_back(it_map->second);
        }
    }
  impacted_group_list.sort();
  impacted_group_list.unique();
}

References m_mapPeptideToGroup, and pappso::GrpPeptideSet::m_peptidePtrList.

Referenced by pappso::GrpExperiment::addSubGroupSp().

set()

void pappso::GrpMapPeptideToGroup::set	(	const GrpPeptideSet &	peptide_set_in,
		GrpGroupSp	grp_group )

set peptide keys pointing on the group

Definition at line 71 of file grpmappeptidetogroup.cpp.

{
 
  auto it_peptide_end = peptide_set_in.m_peptidePtrList.end();
 
  for(auto it_peptide = peptide_set_in.m_peptidePtrList.begin(); it_peptide != it_peptide_end;
      it_peptide++)
    {
      std::pair<std::map<GrpPeptide *, GrpGroupSp>::iterator, bool> ret =
        m_mapPeptideToGroup.insert(std::pair<GrpPeptide *, GrpGroupSp>(*it_peptide, grp_group));
      if(ret.second == false)
        { //=> key already exists : replace by grp_group
          ret.first->second = grp_group;
        }
    }
}

References m_mapPeptideToGroup, and pappso::GrpPeptideSet::m_peptidePtrList.

Referenced by pappso::GrpExperiment::addSubGroupSp().

Member Data Documentation

m_mapPeptideToGroup

std::map<GrpPeptide *, GrpGroupSp> pappso::GrpMapPeptideToGroup::m_mapPeptideToGroup

private

Definition at line 45 of file grpmappeptidetogroup.h.

Referenced by GrpMapPeptideToGroup(), clear(), getGroupList(), and set().

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The documentation for this class was generated from the following files:

• pappsomspp/core/grouping/grpmappeptidetogroup.h
• pappsomspp/core/grouping/grpmappeptidetogroup.cpp