pappso::GrpGroupingMonitor Class Reference

#include <grpgroupingmonitor.h>

Inheritance diagram for pappso::GrpGroupingMonitor:

Public Member Functions
	GrpGroupingMonitor ()
virtual	~GrpGroupingMonitor ()
virtual void	startGrouping (std::size_t total_number_protein, std::size_t total_number_peptide)
virtual void	groupingProtein ()
virtual void	startRemovingNonInformativeSubGroupsInAllGroups (std::size_t total_number_group)
virtual void	stopRemovingNonInformativeSubGroupsInAllGroups (std::size_t total_number_group)
virtual void	removingNonInformativeSubGroupsInGroup ()
virtual void	startNumberingAllGroups (std::size_t total_number_group)
virtual void	stopGrouping ()
Public Member Functions inherited from pappso::GrpGroupingMonitorInterface
virtual	~GrpGroupingMonitorInterface ()

Private Attributes
QTextStream *	mp_outStream
std::size_t	m_totalNumberProtein
std::size_t	m_totalNumberPeptide
std::size_t	m_currentProtein

Detailed Description

Definition at line 48 of file grpgroupingmonitor.h.

Constructor & Destructor Documentation

GrpGroupingMonitor()

pappso::GrpGroupingMonitor::GrpGroupingMonitor

(

)

Definition at line 38 of file grpgroupingmonitor.cpp.

{
  mp_outStream = new QTextStream(stderr, QIODevice::WriteOnly);
}

References mp_outStream.

~GrpGroupingMonitor()

pappso::GrpGroupingMonitor::~GrpGroupingMonitor ( )

virtual

Definition at line 43 of file grpgroupingmonitor.cpp.

{
 
  mp_outStream->flush();
  delete mp_outStream;
}

References mp_outStream.

Member Function Documentation

groupingProtein()

void pappso::GrpGroupingMonitor::groupingProtein ( )

virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 62 of file grpgroupingmonitor.cpp.

{
  m_currentProtein++;
  (*mp_outStream) << "grouping protein " << m_currentProtein << " on " << m_totalNumberProtein
                  << "\n";
  mp_outStream->flush();
}

References m_currentProtein, m_totalNumberProtein, and mp_outStream.

removingNonInformativeSubGroupsInGroup()

void pappso::GrpGroupingMonitor::removingNonInformativeSubGroupsInGroup ( )

virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 84 of file grpgroupingmonitor.cpp.

{
  (*mp_outStream) << "removing non informative on a single group\n";
  mp_outStream->flush();
}

References mp_outStream.

startGrouping()

void pappso::GrpGroupingMonitor::startGrouping ( std::size_t total_number_protein, std::size_t total_number_peptide )

virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 51 of file grpgroupingmonitor.cpp.

{
  m_totalNumberProtein = total_number_protein;
  m_totalNumberPeptide = total_number_peptide;
  m_currentProtein     = 0;
  (*mp_outStream) << "start grouping " << m_totalNumberProtein << " proteins "
                  << total_number_peptide << " peptides\n";
  mp_outStream->flush();
}

References m_currentProtein, m_totalNumberPeptide, m_totalNumberProtein, and mp_outStream.

startNumberingAllGroups()

void pappso::GrpGroupingMonitor::startNumberingAllGroups ( std::size_t total_number_group )

virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 90 of file grpgroupingmonitor.cpp.

{
  (*mp_outStream) << "numbering " << total_number_group << " groups\n";
  mp_outStream->flush();
}

References mp_outStream.

startRemovingNonInformativeSubGroupsInAllGroups()

void pappso::GrpGroupingMonitor::startRemovingNonInformativeSubGroupsInAllGroups ( std::size_t total_number_group )

virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 70 of file grpgroupingmonitor.cpp.

{
  (*mp_outStream) << "removing non informative subgroups in all groups (" << total_number_group
                  << ")\n";
  mp_outStream->flush();
}

References mp_outStream.

stopGrouping()

void pappso::GrpGroupingMonitor::stopGrouping ( )

virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 96 of file grpgroupingmonitor.cpp.

{
  (*mp_outStream) << "grouping finished\n";
  mp_outStream->flush();
}

References mp_outStream.

stopRemovingNonInformativeSubGroupsInAllGroups()

void pappso::GrpGroupingMonitor::stopRemovingNonInformativeSubGroupsInAllGroups ( std::size_t total_number_group )

virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 77 of file grpgroupingmonitor.cpp.

{
  (*mp_outStream) << "removing non informative subgroups finished, remaining " << total_number_group
                  << " groups\n";
  mp_outStream->flush();
}

References mp_outStream.

Member Data Documentation

m_currentProtein

std::size_t pappso::GrpGroupingMonitor::m_currentProtein

private

Definition at line 54 of file grpgroupingmonitor.h.

Referenced by groupingProtein(), and startGrouping().

m_totalNumberPeptide

std::size_t pappso::GrpGroupingMonitor::m_totalNumberPeptide

private

Definition at line 53 of file grpgroupingmonitor.h.

Referenced by startGrouping().

m_totalNumberProtein

std::size_t pappso::GrpGroupingMonitor::m_totalNumberProtein

private

Definition at line 52 of file grpgroupingmonitor.h.

Referenced by groupingProtein(), and startGrouping().

mp_outStream

QTextStream* pappso::GrpGroupingMonitor::mp_outStream

private

Definition at line 51 of file grpgroupingmonitor.h.

Referenced by GrpGroupingMonitor(), ~GrpGroupingMonitor(), groupingProtein(), removingNonInformativeSubGroupsInGroup(), startGrouping(), startNumberingAllGroups(), startRemovingNonInformativeSubGroupsInAllGroups(), stopGrouping(), and stopRemovingNonInformativeSubGroupsInAllGroups().

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The documentation for this class was generated from the following files:

• pappsomspp/core/grouping/grpgroupingmonitor.h
• pappsomspp/core/grouping/grpgroupingmonitor.cpp